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| The main monitoring platform currently in operation was installed at the Cuerda del Pozo water reservoir in 2008, and has been collecting data regularly since 2010, including daily profiling down to 30m. measuring |
The main monitoring platform currently in operation was installed at the Cuerda del Pozo water reservoir in Soria (Spain) in 2008, that has been collecting data regularly since 2010, including daily profiling down to 30m. measuring |
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| https://doriie.ifca.es | http://doriiie02.ifca.es/ |
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| (ask for a login id to marco@ifca.unican.es) | (ask for a login id to grid.support [at] ifca.unican.es) |
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| (see https://dorii.eu) | (see http://www.man.poznan.pl/online/en/projects/55/DORII.html) |
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| Along the last four years the LIFE+ project ROEM+ (see http://www.roemplus-life.eu/ ) has resulted in a large advance in the understanding of the water reservoir |
Along the last four years the LIFE+ project ROEM+ (see http://www.roemplus-life.eu/ ) has resulted in a large advance in the understanding of the water reservoir, and in particular completing the hydrological simulation using the Delft3D suite, and progressing significantly towards the modeling of algae bloom. |
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| == Using eDNA == | In 2014 a second monitoring platform was installed at the Cogotas water reservoir in Avila, and the corresponding data is also available. |
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| IN PREPARATION (JMdL, 16 Jan 2015) | In 2016 we will start the modelling of the Sanabria lake. |
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| Initiative to cover wide zones with citizen science http://michiganlakes.msue.msu.edu/uploads/files/Convention_Presentations_Thursday/Maggie_Kronlein_Early_Detection_of_AIS_Using_eDNA.pdf Separate between live and dead cells providing eDNA material http://el.erdc.usace.army.mil/elpubs/pdf/ansrp12-2.pdf THOMSEN et al 2014 http://www.math.ku.dk/~wiuf/journalWiuf/molEcol21.pdf |
New (March 2016): Short presentation at the Global Water Information IG group at RDA 7th Plenary Meeting in Tokyo [[attachment:Global-Water-RDA-CdP.pdf]] [[attachment:Global-Water-RDA-CdP.pptx]] |
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| Molecular Ecology: PERSPECTIVE Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA DAVID M. LODGE, et al. |
This iniatitive is part of the ongoing work at the following international initiatives: |
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3412215/pdf/mec0021-2555.pdf | LifeWatch-EGI-Competence Center: Ecological Observatories, see https://wiki.egi.eu/wiki/Competence_centre_LifeWatch_Ecological_Observatories and section in the corresponding deliverable D6.6 [[attachment:EGI-Engage-D66.pdf]] INDIGO-Datacloud WP2 on Requirements from Research Communities: the Algae Bloom Case Study (see deliverables D2.1 [[attachment:INDIGO-D21.pdf]], [[attachment:INDIGO-D23.pdf]] D2.3 , [[attachment:INDIGO-D24.pdf]] D2.4, and see a short summary here [[attachment:INDIGO-ALGAEBLOOM.pdf]]) The most complete publication of the studies is Dr. Monteoliva PhD Thesis (Feb 2016, in spanish, currently being translated) [[attachment:tesis-monteoliva.pdf]] See the summary of the results presented in the thesis: {{{#!highlight console numbers=disable REMOTE CYBERINFRASTRUCTURES AND MODELLING BASED APPROACH FOR THE IMPROVEMENT OF EUTROPHICATION MANAGEMENT IN LAKES AND RESERVOIRS The main objective of this thesis is to capture the functional processes and variables in determining eutrophication and the risk of a cyanobacteria bloom (cHAB) event, for an optimized and adaptive management of this environmental problem in lakes and reservoirs. Over the last five years, a complete cyberinfrastructure for remote monitoring of the Cuerda del Pozo reservoir ecosystem and also of the nutrient exports from its drainage basin, has been deployed and operated. Several surveys have been conducted including the limnological analysis of water, sediment and biota, which together with the high frequency data, have been used to calibrate and run different models of hydrodynamic and biogeochemical simulation (1DV and 3D) to test several management scenarios: current situation prior to the commissioning of the WWTP, treatment by constructed wetland, and biomanipulation. In particular, the cyanobacteria biomass has been monitored and the associated risk of having cHABs has been estimated, using a calibrated alert system based on WHO recommendations. The system as a whole has a high innovative and demonstrative value, which can be used for research purposes and for use in other cases suffering from this type of environmental problems. Keywords: Eutrophication, cyanobacteria, HAB, cyberinfrastructure, 3D ecological model, reservoir }}} The corresponding set of slides are included here [[attachment:slides-monteoliva.pdf]] |
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| Ancient and Modern eDNA PEDERSEN et al. |
Other (previous) publications: |
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| http://rstb.royalsocietypublishing.org/content/370/1660/20130383 | Integrating a multisensor mobile system in the grid infrastructure Proceedings of INGRID 2010 (ISBN-ISSN: 978-1-4419-5595-1) |
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| == Data Life Cycle == STILL IN PREPARATION (JMdL, 4 Sept 2013) First an introductory article about the interest of open data publication & preservation: [[attachment:stephaniehampton.pdf]] [[attachment:cdp.inp]] [[attachment:cdp.lst]] [[attachment:cdp.lsp]] How NASA Earth missions (satellites) requires a data management plan: [[attachment:nasadatamanagementplanguide.pdf]] WE MAY FOLLOW THE EXAMPLE OF LTER in ENVEurope, http:www.enveurope.eu Check also the [[/Curation|Curation section]]. See the recommendations from Data Curation Center (UK) presented at 2013 meeting: http://www.dcc.ac.uk/resources/curation-lifecycle-model See the document prepared by Jose Juarez in 2012 [[attachment:datalifecycle.pdf]] === TAXONOMY === from papers, via OCR: [[attachment:txocr.pdf]] GBIF report [[attachment:gbif.pdf]] |
Modelling of a Watershed: A Distributed Parallel Application in a Grid Framework, published in COMPUTING AND INFORMATICS, Vol 27, No 2 (2008): http://www.cai.sk/ojs/index.php/cai/article/view/269 [[attachment:CAI.pdf]] |
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| == Monitoring == | |
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| == Access == * [[/Monitoring| Monitoring]]. == The Platform at CdP == * [[/Platform| Platform]]. == The Platform at Cogotas == * [[/Cogotas| Cogotas]]. |
IN PREPARATION (JMdL, 20 Feb 2016) |
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| == Data Formats in use == | == Data Life Cycle == |
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| See the document prepared by Jose Juarez in 2012 [[attachment:dataformats.pdf]] | STILL IN PREPARATION (JMdL, 4 Feb 2016) |
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| See an example of (corrupt) xml file written in Escritorio\Dorii\xml (copied by JMdL in Aug2013) [[attachment:CabeceraTrios201087.zip]] |
The Open Data Preservation portal, available here, is prepared to support the full data life cycle for the data collected at CdP. See "Digital Knowledge Platforms: A Framework for Open Science" as presented by J.Marco in https://indico.egi.eu/indico/getFile.py/access?contribId=95&sessionId=28&resId=0&materialId=slides&confId=2544 See also "An Integrating Fresh Water VRE for LifeWatch" as presented by J.Marco in https://indico.egi.eu/indico/getFile.py/access?contribId=63&sessionId=51&resId=0&materialId=slides&confId=2544 == Modelling results using Delft3D == Results presented by Fernando Aguilar at ... |
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| == On site visits == | |
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| * [[/Visits| Visits]]. | == The Team == |
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| == Cianoficeas == | Current participants: Agustin Monteoliva (PhD Env. Sci, ECOHYDROS SL) Jesus Marco (Research Prof, IFCA) Alberto (PhD Biology, ECOHYDROS SL) Fernando Aguilar (Senior Engineer, IFCA) Jose Augusto Monteoliva (Biologist, ECOHYDROS SL) Daniel Garcia (Physicist, IFCA) Tamara (Env. Scientist, ECOHYDROS SL) |
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| http://www-cyanosite.bio.purdue.edu/images/images.html http://oklahomawatersurvey.org/?p=531 En cuanto a los análisis de cianobacterias, se han obtenido los valores de biomasa (en términos de biovolumen expresado en mm3/m3) para cada una de las tres especies principales identificadas en el embalse en el año 2010. En este sentido, es preciso destacar que la mayor proporción de biovolumen corresponde a ''Anabaena sp.''(83%) seguida por ''Aphanizomenon flos-aquae'' (16%), ambas especies consideradas como especies potencialmente tóxicas. Por su parte ''Woronichinia naegeliana'',presente en un proporción baja (1%), es una especie de cianobacteria sobre la que hay dudas de su toxicidad (ver Willame et al, 2005). Además en Octubre de 2011 fueron detectadas algunas colonias de ''Microcystis flos-aquae'', también catalogada como especie potencialmente tóxica. Asimismo, en el año 2010 durante el periodo de proliferación estival de cianobacterias, fueron detectadas bajas concentraciones de la toxina cylindrospermopsina, (Quesada, comm.per). Estos resultados están en consonancia con algunas publicaciones publicaciones europeas recientes que destacan el papel de los géneros ''Anabaena'' y ''Aphanizomenon'' como productores de cylindrospermopsina (Brient et at., 2008). [[attachment:anabaena0010.tif]]; [[attachment:aphanizomenon0001.tif]]; [[attachment:woronochinia0001.tif]]; [[attachment:Microcystis.tif]] '''DESCRIPCIÓN GENERO ANABAENA''' Anabena presenta filamentos solitarios, en ocasiones formando agregados. Pueden ser rectos, curvados o enrollados regular o irregularmente. Las células tienen formas variadas, desde sub-esféricas a cilíndricas. Es habitual la presencia de vesículas de gas. Los heterocistos aparecen en posiciones intercalares y suelen presentarse en solitario o, excepcionalmente, en pares. Los acinetos aparecen en solitario o formando hileras de hasta 5 ó 6 acinetos y se sitúan por lo general separados de los heterocistos, generalmente con varias células vegetativas entre ambos, aunque también pueden ser adyacentes, como ocurre en ''A. lemmermanii''. TOXINAS PRODUCIDAS: anatoxinas, cylindrospermopsina, microcistinas, saxitoxinas. '''DESCRIPCIÓN GENERO APHANIZOMENON''' Filamentos rectos y generalmente solitarios o, en algunas especies, formando agregados muy característicos denominados “fascículos”. Los filamentos suelen estrecharse hacia los extremos, donde aparecen células terminales de formas variadas (cilíndricas, sub-cilíndricas o en forma de flecha) y ligeramente más estrechas que el resto del filamento. Es habitual que dichas células terminales sean total o parcialmente hialinas y de mayor longitud que las células vegetativas. Las células vegetativas son por lo general más largas que anchas, presentando formas diversas desde elipsoides o en forma de barril hasta cilíndricas. Los heterocistos se sitúan en posiciones intercalares y pueden ser sub-esféricos, elipsoidales u ovalados. Los acinetos presentan formas características de cada especie pudiendo ser sub-esféricos, elipsoidales, ovoides o, en algunas especies, cilíndricos, alcanzando en este último caso longitudes varias veces superiores a las de las células vegetativas del filamento al que pertenecen. En cuanto a su posición, también característica de cada especie, pueden presentarse inmediatamente al lado de los heterocistos o separados de ellos por varias células vegetativas y nunca, salvo rotura de filamento, en posición terminal. TOXINAS PRODUCIDAS: anatoxinas, cylindrospermopsina, microcistinas, saxitoxinas. '''DESCRIPCIÓN GENERO WORONICHINIA''' Colonias microscópicas más o menos esféricas, habitualmente compuestas por sub-colonias. Las colonias de la especie Woronichinia naegeliana presentan una forma arriñonada característica. Las colonias están envueltas en un mucílago fino, que forma pedúnculos en el centro de la colonia. Las células tienen forma desde sub-esféricas ligeramente elongadas a ovaladas u ovoides. En las colonias maduras, las células se agrupan formando una densa capa en la periferia de la colonia. En ocasiones, pueden observarse células libres de las colonias que quedan situadas en la periferia de la colonia de la que proceden. TOXINAS: microcistinas. Hasta el momento sólo existen evidencias parciales de la toxicidad de Woronichinia naegeliana (ver Williame et al, 2005), mientras que en España dicha producción de toxinas no ha podido demostrarse. '''DESCRIPCIÓN GENERO MICROCYSTIS''' Colonias microscópicas o, en ocasiones, macroscópicas, flotantes, con formas de esféricas a irregulares, en algunos casos compuestos por sub-colonias , con células densamente agregadas, rodeadas por un mucílago común , fino, más o menos homogéneo. Las células son esféricas o semiesféricas después de la división, sin envueltas individuales y presentan vesículas de gas visibles al microscopio. La forma de las colonias, el aspecto del mucílago y el diámetro de las células son las características más importantes en la delimitación de especies dentro de este género. TOXINAS PRODUCIDAS: microcistinas. == NEW PROJECT PROGAIA: CO2 AND CH4 MEASUREMENT IN WATER RESERVOIRS == * [[/PROGAIA| PROGAIA]]. == Other Ideas: Underwater Modem == * [[http://grid.ifca.es/wiki/Projects/ULM| ULM]]. == Technical documents == * [[/Technical/Papers |Articles]]. * [[/Technical/DB |Database]]. * [[/Filters |Filters]]. * [[/Technical/Network|Network]]. * [[/InstallationStatus|Installation Status]] * [[/Utils/DBload|DBload Utility]] * [[/Profiler|Profiler]] * [[/Curation|Curation]] * [[/Flex|Flex]] * [[/GIS|GIS]] * [[/Technical/Backups&Security | Backups & Security]] * [[/Technical/DataManagementPlan | Data Management plan]] * [[/Technical/PID | PIDs ]] == Models == * [[/Models/WRF |WRF]] * [[/Models/Delft3D |Delft3D]] * [[/Models/NetCDF | NetCDF]] == Meteorology study == * [[/Meteorology study/ Comparison of temperature and wind in Soria, Vinuesa and the dam of Cuerda del Pozo | Comparison of temperature and wind in Soria, Vinuesa and the dam of Cuerda del Pozo]] * [[/Meteorology study/ Study of weather prediction in Soria and Vinuesa | Study of weather prediction in Soria and Vinuesa]] |
Previous contributors: Alex Monna (ECOHYDROS SL) Jose Juarez (IFCA) Ignacio Coterillo (IFCA) Maria del Campo (IFCA) |
Monitoring and Modelling Water Reservoirs and Lakes
A joint project IFCA - Ecohydros SL
The project on monitoring and modelling water reservoirs and lakes was started in 2005 in the course of the analysis made by the SME company Ecohydros at the Itoiz water reservoir.
The main monitoring platform currently in operation was installed at the Cuerda del Pozo water reservoir in Soria (Spain) in 2008, that has been collecting data regularly since 2010, including daily profiling down to 30m. measuring physical, chemical and biological indicators. The data can be accessed online through the web portal
(ask for a login id to grid.support [at] ifca.unican.es)
The data acquisition and its integration into the e-infrastructure at IFCA was supported by the FP7 EU project DORII (see http://www.man.poznan.pl/online/en/projects/55/DORII.html)
Along the last four years the LIFE+ project ROEM+ (see http://www.roemplus-life.eu/ ) has resulted in a large advance in the understanding of the water reservoir, and in particular completing the hydrological simulation using the Delft3D suite, and progressing significantly towards the modeling of algae bloom.
In 2014 a second monitoring platform was installed at the Cogotas water reservoir in Avila, and the corresponding data is also available.
In 2016 we will start the modelling of the Sanabria lake.
New (March 2016): Short presentation at the Global Water Information IG group at RDA 7th Plenary Meeting in Tokyo Global-Water-RDA-CdP.pdf Global-Water-RDA-CdP.pptx
This iniatitive is part of the ongoing work at the following international initiatives:
LifeWatch-EGI-Competence Center: Ecological Observatories, see https://wiki.egi.eu/wiki/Competence_centre_LifeWatch_Ecological_Observatories and section in the corresponding deliverable D6.6 EGI-Engage-D66.pdf
INDIGO-Datacloud WP2 on Requirements from Research Communities: the Algae Bloom Case Study (see deliverables D2.1 INDIGO-D21.pdf, INDIGO-D23.pdf D2.3 , INDIGO-D24.pdf D2.4, and see a short summary here INDIGO-ALGAEBLOOM.pdf)
The most complete publication of the studies is Dr. Monteoliva PhD Thesis (Feb 2016, in spanish, currently being translated) tesis-monteoliva.pdf
See the summary of the results presented in the thesis:
REMOTE CYBERINFRASTRUCTURES AND MODELLING BASED APPROACH FOR THE IMPROVEMENT OF EUTROPHICATION MANAGEMENT IN LAKES AND RESERVOIRS
The main objective of this thesis is to capture the functional processes and variables in determining eutrophication and the risk of a cyanobacteria bloom (cHAB) event, for an optimized and adaptive management of this environmental problem in lakes and reservoirs.
Over the last five years, a complete cyberinfrastructure for remote monitoring of the Cuerda del Pozo reservoir ecosystem and also of the nutrient exports from its drainage basin, has been deployed and operated. Several surveys have been conducted including the limnological analysis of water, sediment and biota, which together with the high frequency data, have been used to calibrate and run different models of hydrodynamic and biogeochemical simulation (1DV and 3D) to test several management scenarios: current situation prior to the commissioning of the WWTP, treatment by constructed wetland, and biomanipulation.
In particular, the cyanobacteria biomass has been monitored and the associated risk of having cHABs has been estimated, using a calibrated alert system based on WHO recommendations. The system as a whole has a high innovative and demonstrative value, which can be used for research purposes and for use in other cases suffering from this type of environmental problems.
Keywords: Eutrophication, cyanobacteria, HAB, cyberinfrastructure, 3D ecological model, reservoir
The corresponding set of slides are included here slides-monteoliva.pdf
Other (previous) publications:
Integrating a multisensor mobile system in the grid infrastructure Proceedings of INGRID 2010 (ISBN-ISSN: 978-1-4419-5595-1)
Modelling of a Watershed: A Distributed Parallel Application in a Grid Framework, published in COMPUTING AND INFORMATICS, Vol 27, No 2 (2008): http://www.cai.sk/ojs/index.php/cai/article/view/269 CAI.pdf
Monitoring
IN PREPARATION (JMdL, 20 Feb 2016)
Data Life Cycle
STILL IN PREPARATION (JMdL, 4 Feb 2016)
The Open Data Preservation portal, available here, is prepared to support the full data life cycle for the data collected at CdP.
See "Digital Knowledge Platforms: A Framework for Open Science" as presented by J.Marco in https://indico.egi.eu/indico/getFile.py/access?contribId=95&sessionId=28&resId=0&materialId=slides&confId=2544
See also "An Integrating Fresh Water VRE for LifeWatch" as presented by J.Marco in https://indico.egi.eu/indico/getFile.py/access?contribId=63&sessionId=51&resId=0&materialId=slides&confId=2544
Modelling results using Delft3D
Results presented by Fernando Aguilar at ...
The Team
Current participants: Agustin Monteoliva (PhD Env. Sci, ECOHYDROS SL) Jesus Marco (Research Prof, IFCA) Alberto (PhD Biology, ECOHYDROS SL) Fernando Aguilar (Senior Engineer, IFCA) Jose Augusto Monteoliva (Biologist, ECOHYDROS SL) Daniel Garcia (Physicist, IFCA) Tamara (Env. Scientist, ECOHYDROS SL)
Previous contributors: Alex Monna (ECOHYDROS SL) Jose Juarez (IFCA) Ignacio Coterillo (IFCA) Maria del Campo (IFCA)